Variant report

Variant	rs57962534
Chromosome Location	chr11:107260178-107260179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107258832..107260455-chr11:107266741..107268577,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11212280	1.00[ASN][1000 genomes]
rs34011090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196921	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57054862	1.00[ASN][1000 genomes]
rs58259794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58348966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58916919	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60283516	1.00[ASN][1000 genomes]
rs60422535	1.00[ASN][1000 genomes]
rs60753769	0.84[EUR][1000 genomes]
rs61106913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112793	1.00[ASN][1000 genomes]
rs9888291	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898364	chr11:106944975-107285636	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898365	chr11:106944975-107430300	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898366	chr11:106944975-107433835	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898367	chr11:106944975-107443420	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv898369	chr11:106958304-107443420	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv898370	chr11:107027991-107430300	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv898372	chr11:107049968-107433835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1038368	chr11:107116577-107664181	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv541163	chr11:107116577-107664181	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv898373	chr11:107124903-107433835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv832261	chr11:107145901-107321562	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv898374	chr11:107156880-107263130	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv2756363	chr11:107189790-107376790	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv556376	chr11:107250851-107486598	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107195000-107299200	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:107223000-107260600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:107223000-107260600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:107230200-107261400	Weak transcription	Ovary	ovary
5	chr11:107240600-107261800	Weak transcription	Fetal Lung	lung
6	chr11:107241600-107261200	Weak transcription	Fetal Kidney	kidney
7	chr11:107241600-107327800	Weak transcription	HSMMtube	muscle
8	chr11:107243800-107267600	Weak transcription	Gastric	stomach
9	chr11:107248600-107260800	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:107248600-107261400	Weak transcription	Thymus	Thymus
11	chr11:107249000-107261000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:107249000-107267600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:107249400-107260600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:107250200-107261800	Weak transcription	Psoas Muscle	Psoas
15	chr11:107251400-107260800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:107252000-107261000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:107252000-107261000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:107252200-107260400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:107252200-107260400	Weak transcription	GM12878-XiMat	blood
20	chr11:107252400-107267800	Weak transcription	Right Ventricle	heart
21	chr11:107252600-107267800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:107252600-107281200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:107252600-107323800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:107253000-107261400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:107253000-107261400	Weak transcription	Pancreas	Pancrea
26	chr11:107253600-107260600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:107253800-107260600	Weak transcription	HSMM	muscle
28	chr11:107254000-107260800	Weak transcription	Fetal Intestine Large	intestine
29	chr11:107254000-107261200	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:107254200-107260400	Weak transcription	Dnd41	blood
31	chr11:107254200-107261400	Weak transcription	Left Ventricle	heart
32	chr11:107254200-107261400	Weak transcription	Lung	lung
33	chr11:107255000-107327600	Weak transcription	Fetal Heart	heart
34	chr11:107256200-107261400	Weak transcription	Spleen	Spleen
35	chr11:107256600-107261000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:107256600-107261000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:107256600-107263000	Weak transcription	Brain Angular Gyrus	brain
38	chr11:107256600-107264000	Weak transcription	NH-A	brain
39	chr11:107256600-107298000	Weak transcription	Brain Substantia Nigra	brain
40	chr11:107256600-107327600	Weak transcription	NHDF-Ad	bronchial
41	chr11:107256800-107260200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:107256800-107261600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:107256800-107262400	Weak transcription	Osteobl	bone
44	chr11:107256800-107268200	Weak transcription	A549	lung
45	chr11:107256800-107274800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr11:107257000-107260400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:107257000-107260600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:107257000-107261000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:107257000-107261000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:107257000-107261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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