Variant report

Variant	rs57969771
Chromosome Location	chr7:38953377-38953378
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4723804	0.83[AFR][1000 genomes]
rs58060833	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60188419	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73369911	1.00[AMR][1000 genomes]
rs73370792	1.00[AMR][1000 genomes]
rs758088	0.83[AFR][1000 genomes]
rs7782140	0.83[AFR][1000 genomes]
rs7782277	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38952200-38953400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:38952800-38953800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:38953000-38953400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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