Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr1:175017866-175018320	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
SDCCAG3P2	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11578419	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11802280	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12691475	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12730537	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13373936	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17302506	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2072031	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2105948	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2213853	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2213854	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34142971	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34731331	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3737935	0.80[ASN][1000 genomes]
rs4408114	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56105959	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58721108	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425316	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6656377	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6656523	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6683495	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7515578	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9286900	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv946512	chr1:175013171-175019073	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57969863	RABGAP1L	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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