Variant report

Variant	rs57971185
Chromosome Location	chr11:66204110-66204111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66197807..66202007-chr11:66202412..66207271,7	K562	blood:
2	chr11:66183520..66189580-chr11:66204076..66208200,8	K562	blood:
3	chr11:66204033..66208144-chr11:66232603..66235665,3	K562	blood:
4	chr11:66202690..66204715-chr11:66204963..66207205,2	MCF-7	breast:
5	chr11:66082434..66085363-chr11:66203796..66205513,2	K562	blood:
6	chr11:66204104..66208501-chr11:66232741..66235835,4	K562	blood:

Variant related genes	Relation type
ENSG00000201733	Chromatin interaction
ENSG00000174807	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000174576	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11227492	1.00[AMR][1000 genomes]
rs11227528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292547	1.00[AMR][1000 genomes]
rs28464796	1.00[AMR][1000 genomes]
rs73505427	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
2	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
3	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
6	nsv897786	chr11:66203025-66244015	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66188800-66205600	Weak transcription	Right Atrium	heart
2	chr11:66189000-66204800	Weak transcription	Fetal Heart	heart
3	chr11:66189200-66205600	Weak transcription	Stomach Mucosa	stomach
4	chr11:66190200-66205000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:66191600-66205600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:66192200-66204400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:66197200-66204400	Weak transcription	Fetal Brain Male	brain
8	chr11:66197600-66205600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:66198600-66205400	Weak transcription	Small Intestine	intestine
10	chr11:66199200-66205000	Strong transcription	Fetal Stomach	stomach
11	chr11:66199400-66205000	Strong transcription	Fetal Intestine Small	intestine
12	chr11:66200000-66204600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:66200000-66204800	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:66200200-66204800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:66200200-66204800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:66200600-66204200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:66200800-66204800	Weak transcription	GM12878-XiMat	blood
18	chr11:66201000-66204400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:66201000-66205400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:66201000-66205400	Weak transcription	HSMM	muscle
21	chr11:66201200-66204800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:66201200-66205400	Weak transcription	Psoas Muscle	Psoas
23	chr11:66201800-66204400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:66201800-66204600	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr11:66201800-66204600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr11:66201800-66205000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr11:66201800-66205400	Weak transcription	HMEC	breast
28	chr11:66202000-66204600	Strong transcription	Liver	Liver
29	chr11:66202200-66204600	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr11:66202200-66204800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:66202200-66204800	Strong transcription	Fetal Intestine Large	intestine
32	chr11:66202400-66204200	Strong transcription	HUVEC	blood vessel
33	chr11:66202400-66204400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:66202400-66204600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:66202400-66204600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:66202400-66204600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:66202400-66204600	Strong transcription	Colon Smooth Muscle	Colon
38	chr11:66202400-66204600	Strong transcription	Fetal Thymus	thymus
39	chr11:66202400-66204600	Strong transcription	Hela-S3	cervix
40	chr11:66202400-66204600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:66202400-66204800	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:66202400-66204800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:66202400-66204800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:66202400-66204800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:66202400-66204800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:66202400-66204800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:66202400-66204800	Strong transcription	Primary T cells from cord blood	blood
48	chr11:66202400-66204800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:66202400-66204800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:66202400-66204800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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