Variant report

Variant	rs57971718
Chromosome Location	chr13:51804065-51804066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17075319	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51797400-51804600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr13:51797400-51804800	Weak transcription	Aorta	Aorta
3	chr13:51797600-51804400	Weak transcription	NHLF	lung
4	chr13:51797800-51806000	Enhancers	Fetal Brain Male	brain
5	chr13:51798200-51804600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:51798400-51804800	Weak transcription	Lung	lung
7	chr13:51799600-51804400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr13:51799600-51809000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:51799600-51809800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:51799800-51818200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr13:51800400-51804600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr13:51800600-51804600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr13:51800600-51804600	Enhancers	Brain Hippocampus Middle	brain
14	chr13:51800800-51804800	Enhancers	Colon Smooth Muscle	Colon
15	chr13:51801600-51804600	Enhancers	Rectal Smooth Muscle	rectum
16	chr13:51802000-51805600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr13:51802800-51804600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr13:51802800-51805800	Enhancers	Fetal Heart	heart
19	chr13:51803000-51804800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:51803000-51805200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:51803000-51805200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
22	chr13:51803000-51805400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr13:51803200-51804400	Enhancers	Stomach Smooth Muscle	stomach
24	chr13:51803200-51804600	Enhancers	Brain Substantia Nigra	brain
25	chr13:51803200-51804800	Enhancers	Left Ventricle	heart
26	chr13:51803200-51805000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr13:51803200-51805200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr13:51803200-51805200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr13:51803400-51804400	Enhancers	HUVEC	blood vessel
30	chr13:51803400-51804600	Enhancers	Brain Anterior Caudate	brain
31	chr13:51803400-51804600	Enhancers	Fetal Lung	lung
32	chr13:51803400-51805600	Enhancers	Fetal Muscle Leg	muscle
33	chr13:51803600-51804200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:51803600-51804600	Enhancers	Brain Cingulate Gyrus	brain
35	chr13:51803600-51804600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr13:51803600-51804600	Weak transcription	Right Atrium	heart
37	chr13:51803600-51804800	Weak transcription	Pancreas	Pancrea
38	chr13:51803600-51805600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr13:51803600-51809800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr13:51803800-51804200	Flanking Active TSS	Fetal Brain Female	brain
41	chr13:51803800-51804600	Weak transcription	Psoas Muscle	Psoas
42	chr13:51803800-51804800	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr13:51803800-51805200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr13:51803800-51805400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr13:51804000-51804200	Enhancers	H9 Cell Line	embryonic stem cell
46	chr13:51804000-51804200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr13:51804000-51804200	Enhancers	Brain Germinal Matrix	brain
48	chr13:51804000-51804200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr13:51804000-51804200	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr13:51804000-51804200	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links