Variant report

Variant	rs579735
Chromosome Location	chr9:14078455-14078456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14074317..14076748-chr9:14077516..14080431,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1689281	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs548824	0.86[EUR][1000 genomes]
rs578720	0.89[EUR][1000 genomes]
rs578809	0.89[EUR][1000 genomes]
rs7858	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14071800-14078800	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:14073400-14092600	Weak transcription	Aorta	Aorta
3	chr9:14074800-14090400	Weak transcription	Adipose Nuclei	Adipose
4	chr9:14075400-14116000	Weak transcription	Gastric	stomach
5	chr9:14075600-14078800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:14075600-14082800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:14075800-14079600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:14075800-14080400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:14076000-14079600	Weak transcription	HMEC	breast
10	chr9:14076000-14079800	Weak transcription	NHEK	skin
11	chr9:14076000-14080600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:14076000-14083600	Weak transcription	Fetal Heart	heart
13	chr9:14076600-14084400	Weak transcription	Left Ventricle	heart
14	chr9:14077000-14079600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:14077200-14078800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:14077200-14079800	Enhancers	Fetal Lung	lung
17	chr9:14077800-14080800	Weak transcription	HSMM	muscle
18	chr9:14077800-14084400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:14077800-14084400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:14077800-14088800	Weak transcription	Fetal Brain Female	brain
21	chr9:14078000-14080800	Weak transcription	Osteobl	bone
22	chr9:14078000-14112800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:14078200-14085200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links