Variant report
| Variant | rs57980525 |
|---|---|
| Chromosome Location | chr6:145712660-145712661 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:145711757..145713272-chr6:145716278..145717779,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs34729185 | 0.83[ASN][1000 genomes] |
| rs35303723 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3901447 | 1.00[ASN][1000 genomes] |
| rs56055951 | 1.00[ASN][1000 genomes] |
| rs56291136 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56323244 | 1.00[ASN][1000 genomes] |
| rs6922956 | 0.95[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6935624 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6936142 | 1.00[ASN][1000 genomes] |
| rs73785028 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9484976 | 1.00[ASN][1000 genomes] |
| rs9484977 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9484978 | 1.00[ASN][1000 genomes] |
| rs9484979 | 1.00[ASN][1000 genomes] |
| rs9484980 | 1.00[ASN][1000 genomes] |
| rs9484981 | 1.00[ASN][1000 genomes] |
| rs9484984 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9484985 | 1.00[ASN][1000 genomes] |
| rs9497276 | 1.00[ASN][1000 genomes] |
| rs9497277 | 1.00[ASN][1000 genomes] |
| rs9497278 | 1.00[ASN][1000 genomes] |
| rs9497281 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9497282 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017166 | chr6:145677071-145808448 | Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv604838 | chr6:145709371-145841146 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:145712600-145717200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
