Variant report

Variant	rs57986760
Chromosome Location	chr3:112714415-112714416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112713372..112715883-chr3:112716747..112720501,3	MCF-7	breast:
2	chr3:112712440..112714987-chr3:112718253..112721198,2	K562	blood:
3	chr3:112359718..112361876-chr3:112712356..112714759,2	MCF-7	breast:
4	chr3:112711817..112714434-chr3:112727863..112730270,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction
ENSG00000163608	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1488192	1.00[AMR][1000 genomes]
rs1844081	1.00[AMR][1000 genomes]
rs1844082	1.00[AMR][1000 genomes]
rs1844083	1.00[AMR][1000 genomes]
rs57252468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857308	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112710400-112721200	Weak transcription	Lung	lung
2	chr3:112710400-112721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:112710400-112721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:112710400-112724200	Weak transcription	Small Intestine	intestine
5	chr3:112710400-112737400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:112710600-112715800	Weak transcription	Placenta	Placenta
7	chr3:112710600-112716800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:112710600-112717000	Weak transcription	Esophagus	oesophagus
9	chr3:112710600-112717000	Weak transcription	Left Ventricle	heart
10	chr3:112710600-112721000	Weak transcription	Pancreas	Pancrea
11	chr3:112710600-112721000	Weak transcription	Right Ventricle	heart
12	chr3:112710600-112721000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:112710600-112721200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:112710600-112721200	Weak transcription	Ovary	ovary
15	chr3:112710600-112721400	Weak transcription	HSMMtube	muscle
16	chr3:112710600-112723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:112710600-112725000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr3:112710800-112718400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:112710800-112718800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:112710800-112721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:112711000-112717200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:112711200-112714600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:112711200-112718600	Weak transcription	Colonic Mucosa	Colon
24	chr3:112711400-112715000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:112711400-112715000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:112711400-112715600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:112711400-112715600	Weak transcription	Liver	Liver
28	chr3:112711400-112715800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr3:112711400-112716000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr3:112711400-112716400	Weak transcription	Adipose Nuclei	Adipose
31	chr3:112711400-112716800	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:112711400-112716800	Weak transcription	HSMM	muscle
33	chr3:112711400-112716800	Weak transcription	Osteobl	bone
34	chr3:112711400-112717000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr3:112711400-112717000	Weak transcription	Thymus	Thymus
36	chr3:112711400-112717200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:112711400-112718000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:112711400-112718800	Weak transcription	Fetal Stomach	stomach
39	chr3:112711400-112719800	Weak transcription	Brain Substantia Nigra	brain
40	chr3:112711400-112721200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr3:112711400-112721200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:112711400-112721200	Weak transcription	Psoas Muscle	Psoas
43	chr3:112711400-112721200	Weak transcription	Spleen	Spleen
44	chr3:112711400-112736600	Weak transcription	Stomach Mucosa	stomach
45	chr3:112711600-112715600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:112711600-112715600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:112711600-112716400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:112711600-112716400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr3:112711600-112716800	Weak transcription	NH-A	brain
50	chr3:112711600-112717000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links