Variant report

Variant	rs57987255
Chromosome Location	chr5:114665730-114665731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58765710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741404	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv968979	chr5:114662534-114669970	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114662000-114670400	Weak transcription	Psoas Muscle	Psoas
2	chr5:114663600-114666000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:114664000-114665800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:114664000-114665800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:114664200-114666000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:114664600-114665800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:114664800-114665800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:114665000-114665800	Enhancers	Brain Germinal Matrix	brain
9	chr5:114665000-114666000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:114665200-114665800	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr5:114665400-114665800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr5:114665400-114665800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr5:114665400-114665800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr5:114665600-114665800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:114665600-114665800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:114665600-114669000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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