Variant report

Variant	rs57995350
Chromosome Location	chr3:139128108-139128109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10513063	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1602626	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1602628	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17316181	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17335312	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17394620	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17395611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494356	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17494482	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17560106	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1844977	0.85[ASN][1000 genomes]
rs2289348	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2289350	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2291555	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2307031	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2882080	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2882081	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3772871	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3772876	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41356949	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41399544	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55922868	1.00[ASN][1000 genomes]
rs56993164	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57707457	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58060926	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59628512	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59958973	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59960641	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61034702	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61613889	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61680644	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7428398	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv949635	chr3:139091219-139367043	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139113200-139133000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:139114200-139153800	Weak transcription	Left Ventricle	heart
3	chr3:139124200-139133400	Weak transcription	Ovary	ovary

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