Variant report
| Variant | rs5799624 |
|---|---|
| Chromosome Location | chr12:83783800-83783801 |
| allele | -/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:83078627..83080390-chr12:83781749..83784378,2 | MCF-7 | breast: | |
| 2 | chr12:83079105..83081641-chr12:83780765..83784408,3 | MCF-7 | breast: | |
| 3 | chr12:83778698..83781500-chr12:83783078..83784583,2 | K562 | blood: | |
| 4 | chr12:83079259..83080112-chr12:83782817..83783839,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179104 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv521849 | chr12:83013783-83991479 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1042674 | chr12:83620899-83942628 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv899353 | chr12:83755861-83792347 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv899354 | chr12:83755861-83813669 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2762994 | chr12:83783139-83785486 | Enhancers Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
