Variant report

Variant	rs58013027
Chromosome Location	chr5:178369152-178369153
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2597770	chr5:178369152-178369152	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178352400-178369200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
3	chr5:178364600-178369200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr5:178365200-178369200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:178366000-178370200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
6	chr5:178366400-178369200	ZNF genes & repeats	Lung	lung
7	chr5:178366400-178372600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:178366800-178370200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr5:178366800-178370200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr5:178366800-178370400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:178367000-178370400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr5:178367000-178374600	ZNF genes & repeats	Spleen	Spleen
13	chr5:178367200-178369200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
14	chr5:178367400-178369800	Active TSS	Rectal Smooth Muscle	rectum
15	chr5:178367400-178370600	ZNF genes & repeats	Fetal Intestine Large	intestine
16	chr5:178367600-178369200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:178367600-178369200	Active TSS	Fetal Brain Female	brain
18	chr5:178368400-178369200	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr5:178368400-178370400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:178368600-178369200	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr5:178368600-178369400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:178368600-178370200	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr5:178368800-178370000	ZNF genes & repeats	Placenta	Placenta
24	chr5:178368800-178370400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:178368800-178377000	Weak transcription	Psoas Muscle	Psoas
26	chr5:178369000-178369200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:178369000-178369200	Enhancers	Adipose Nuclei	Adipose
28	chr5:178369000-178369200	Flanking Active TSS	Brain Anterior Caudate	brain
29	chr5:178369000-178369200	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr5:178369000-178369200	Active TSS	Brain Germinal Matrix	brain
31	chr5:178369000-178369200	Enhancers	Colon Smooth Muscle	Colon
32	chr5:178369000-178369200	Enhancers	Fetal Heart	heart
33	chr5:178369000-178369200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr5:178369000-178369200	Enhancers	Fetal Muscle Leg	muscle
35	chr5:178369000-178369200	Enhancers	Pancreas	Pancrea
36	chr5:178369000-178369200	Enhancers	Right Ventricle	heart
37	chr5:178369000-178369400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:178369000-178369400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr5:178369000-178369400	Enhancers	Fetal Brain Male	brain
40	chr5:178369000-178369600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:178369000-178369600	Weak transcription	Brain Hippocampus Middle	brain
42	chr5:178369000-178369600	Weak transcription	Esophagus	oesophagus
43	chr5:178369000-178369600	Weak transcription	Fetal Lung	lung
44	chr5:178369000-178369600	Enhancers	Ovary	ovary
45	chr5:178369000-178369800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:178369000-178369800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr5:178369000-178370000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:178369000-178370200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:178369000-178371000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr5:178369000-178371200	Weak transcription	Brain Angular Gyrus	brain

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