Variant report

Variant	rs58014359
Chromosome Location	chr15:101255446-101255447
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr15:101255319-101255589	HepG2	liver:	n/a	chr15:101255499-101255517
2	SIN3AK20	chr15:101253279-101256619	MCF-7	breast:	n/a	n/a
3	MAFK	chr15:101255397-101255641	HepG2	liver:	n/a	n/a
4	NR2F2	chr15:101255118-101256639	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:101233260..101235186-chr15:101253441..101255513,2	MCF-7	breast:
2	chr15:101253708..101255692-chr15:101256564..101258496,4	MCF-7	breast:
3	chr15:101253894..101256107-chr15:101395953..101398034,2	MCF-7	breast:
4	chr15:101253867..101255956-chr15:101418721..101421246,2	MCF-7	breast:
5	chr1:175045192..175046870-chr15:101253779..101256143,2	MCF-7	breast:
6	chr15:101252199..101256502-chr15:101389329..101394461,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259579	TF binding region
ENSG00000272808	Chromatin interaction
ENSG00000232386	Chromatin interaction
ENSG00000184254	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10451036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12437772	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12437902	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12439926	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12440148	1.00[AFR][1000 genomes]
rs12440805	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12440858	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12443083	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2411842	1.00[AFR][1000 genomes]
rs28520070	0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3929381	1.00[AFR][1000 genomes]
rs59128478	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs59575226	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs61507228	0.88[AMR][1000 genomes]
rs747326	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870422	chr15:100460234-101401019	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	n/a
2	nsv1050155	chr15:100764638-101320462	Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
3	nsv542533	chr15:100764638-101320462	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
4	nsv1041172	chr15:100975213-101602839	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
5	nsv1050199	chr15:100977525-101607280	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
6	nsv542536	chr15:100977525-101607280	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
7	esv3446550	chr15:100983111-101616198	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
8	nsv530850	chr15:100988191-101602641	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
9	nsv1043180	chr15:100989328-101585798	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	n/a
10	nsv542537	chr15:100989328-101585798	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	n/a
11	nsv1043341	chr15:100989328-101606657	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
12	nsv542538	chr15:100989328-101606657	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
13	nsv530687	chr15:100996096-101609980	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
14	nsv534423	chr15:100996096-101645331	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	n/a
15	nsv948464	chr15:101002346-101610336	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
16	nsv949361	chr15:101002738-101595898	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
17	nsv817593	chr15:101012299-101602641	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
18	nsv530851	chr15:101042563-101627479	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	n/a
19	nsv916934	chr15:101055749-101585912	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	n/a
20	nsv948385	chr15:101120963-101387029	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
21	nsv1043985	chr15:101156747-101436615	Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
22	nsv1049749	chr15:101178550-101376368	Genic enhancers Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
23	nsv542539	chr15:101178550-101376368	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
24	nsv1052636	chr15:101227885-101585798	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	n/a
25	nsv528937	chr15:101229784-101304166	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
26	nsv833108	chr15:101232683-101408785	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:101251000-101255800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:101251200-101255800	Enhancers	Fetal Heart	heart
3	chr15:101251200-101256600	Enhancers	Fetal Muscle Leg	muscle
4	chr15:101251400-101255800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:101251400-101257000	Enhancers	Fetal Intestine Small	intestine
6	chr15:101251600-101255800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:101252000-101256000	Enhancers	Placenta	Placenta
8	chr15:101252000-101259400	Enhancers	Pancreas	Pancrea
9	chr15:101252600-101255600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:101252600-101260600	Weak transcription	NHLF	lung
11	chr15:101252800-101255600	Weak transcription	Fetal Lung	lung
12	chr15:101253200-101257200	Enhancers	Lung	lung
13	chr15:101253400-101255600	Bivalent Enhancer	HepG2	liver
14	chr15:101253400-101257200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:101253800-101256000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:101253800-101260600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:101254200-101256800	Enhancers	A549	lung
18	chr15:101254200-101257000	Weak transcription	Left Ventricle	heart
19	chr15:101254200-101257200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr15:101254200-101258400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:101254200-101260600	Weak transcription	NH-A	brain
22	chr15:101254200-101260800	Weak transcription	HSMMtube	muscle
23	chr15:101254400-101255600	Weak transcription	Fetal Intestine Large	intestine
24	chr15:101254400-101255800	Weak transcription	Stomach Mucosa	stomach
25	chr15:101254400-101256400	Enhancers	Fetal Stomach	stomach
26	chr15:101254400-101261000	Weak transcription	Small Intestine	intestine
27	chr15:101254600-101257000	Enhancers	Hela-S3	cervix
28	chr15:101254600-101258200	Weak transcription	Esophagus	oesophagus
29	chr15:101254600-101260400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:101254800-101256400	Weak transcription	Spleen	Spleen
31	chr15:101254800-101258800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:101255200-101257200	Enhancers	Liver	Liver
33	chr15:101255400-101255600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:101255400-101256600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
35	chr15:101255400-101257000	Enhancers	Right Atrium	heart
36	chr15:101255400-101257200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
37	chr15:101255400-101258400	Weak transcription	HMEC	breast

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