The 2.0 version of rSNPBase

Variant report

Variant rs58020890
Chromosome Location chr1:61792588-61792589
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61744600-61798600 Weak transcription Fetal Muscle Trunk muscle
2 chr1:61778400-61792800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:61784800-61799400 Weak transcription Left Ventricle heart
4 chr1:61784800-61800400 Weak transcription Ovary ovary
5 chr1:61784800-61802800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:61784800-61803200 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:61784800-61803600 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr1:61785000-61797200 Weak transcription HUVEC blood vessel
9 chr1:61785000-61802400 Weak transcription Primary hematopoietic stem cells blood
10 chr1:61785000-61802400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:61786000-61813600 Weak transcription Duodenum Mucosa Duodenum
12 chr1:61786200-61799000 Weak transcription Fetal Intestine Large intestine
13 chr1:61786400-61798600 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr1:61786600-61799800 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:61786600-61800400 Weak transcription Brain Anterior Caudate brain
16 chr1:61786600-61800400 Weak transcription Colon Smooth Muscle Colon
17 chr1:61786600-61800400 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr1:61788400-61800600 Weak transcription Gastric stomach
19 chr1:61788400-61802800 Weak transcription Placenta Placenta
20 chr1:61790000-61795600 Weak transcription A549 lung
21 chr1:61790000-61799000 Weak transcription Liver Liver
22 chr1:61790000-61799000 Weak transcription K562 blood
23 chr1:61790000-61799800 Weak transcription Right Ventricle heart
24 chr1:61790000-61803600 Weak transcription Hela-S3 cervix
25 chr1:61790000-61805400 Weak transcription Lung lung
26 chr1:61790200-61800600 Weak transcription Pancreas Pancrea
27 chr1:61790400-61798000 Weak transcription Fetal Muscle Leg muscle
28 chr1:61790400-61798200 Weak transcription Aorta Aorta
29 chr1:61790600-61795400 Weak transcription HMEC breast
30 chr1:61791200-61795200 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:61791200-61799000 Weak transcription Fetal Stomach stomach
32 chr1:61791200-61800200 Weak transcription Fetal Intestine Small intestine
33 chr1:61791200-61800400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:61791400-61799000 Weak transcription Fetal Lung lung
35 chr1:61792000-61795200 Weak transcription NHEK skin
36 chr1:61792200-61792600 Enhancers Psoas Muscle Psoas
37 chr1:61792200-61792600 Enhancers HepG2 liver
38 chr1:61792200-61795200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:61792200-61796200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr1:61792400-61792600 Enhancers Right Atrium heart
41 chr1:61792400-61795200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015