Variant report

Variant	rs58021105
Chromosome Location	chr1:95618600-95618601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12028839	1.00[EUR][1000 genomes]
rs74103664	1.00[EUR][1000 genomes]
rs74103669	1.00[EUR][1000 genomes]
rs74103688	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv870669	chr1:95586773-95690269	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95584000-95629400	Weak transcription	Aorta	Aorta
2	chr1:95585400-95636800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:95592800-95634200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:95592800-95661800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:95598800-95633800	Weak transcription	Fetal Heart	heart
6	chr1:95600000-95650200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:95601800-95633600	Weak transcription	HepG2	liver
8	chr1:95602200-95628000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr1:95602800-95628800	Weak transcription	Adipose Nuclei	Adipose
10	chr1:95602800-95634200	Weak transcription	Left Ventricle	heart
11	chr1:95603000-95640800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:95604200-95630000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr1:95609000-95629000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:95610600-95620200	Strong transcription	K562	blood
15	chr1:95610600-95628200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:95611400-95628000	Weak transcription	Brain Anterior Caudate	brain
17	chr1:95611800-95630600	Weak transcription	A549	lung
18	chr1:95612400-95629600	Weak transcription	Fetal Intestine Large	intestine
19	chr1:95614800-95629200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr1:95615000-95628000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:95618000-95620000	Strong transcription	Liver	Liver
22	chr1:95618400-95639200	Weak transcription	Colonic Mucosa	Colon
23	chr1:95618600-95637600	Weak transcription	Psoas Muscle	Psoas

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