Variant report
| Variant | rs58028863 |
|---|---|
| Chromosome Location | chr1:84928930-84928931 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000117133 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs72948414 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72948420 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72948429 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72948448 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72948475 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72948488 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830437 | chr1:84837524-85001269 | Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
