Variant report

Variant	rs58035998
Chromosome Location	chr3:155367506-155367507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16825206	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680212	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9811329	0.91[ASN][1000 genomes]
rs9814642	0.81[ASN][1000 genomes]
rs9838305	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155357400-155379000	Weak transcription	Gastric	stomach
2	chr3:155364800-155369600	Weak transcription	A549	lung
3	chr3:155365400-155375000	Weak transcription	Fetal Thymus	thymus
4	chr3:155365400-155375000	Weak transcription	Thymus	Thymus
5	chr3:155366200-155368400	Weak transcription	Fetal Kidney	kidney
6	chr3:155366200-155369200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:155366600-155379000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:155366600-155379000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:155366800-155369600	Weak transcription	HepG2	liver
10	chr3:155367000-155368600	Weak transcription	Stomach Mucosa	stomach
11	chr3:155367400-155369600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:155367400-155376800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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