Variant report

Variant	rs58038438
Chromosome Location	chr3:113297203-113297204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:113254497..113255223-chr3:113296850..113297376,2	MCF-7	breast:
2	chr3:113234276..113236578-chr3:113295557..113299306,4	MCF-7	breast:
3	chr3:113251742..113258014-chr3:113293792..113298380,10	MCF-7	breast:
4	chr3:113297202..113299908-chr3:113300399..113302111,2	MCF-7	breast:
5	chr3:113212683..113213922-chr3:113296433..113297390,4	K562	blood:
6	chr3:113279187..113281420-chr3:113296138..113298010,2	MCF-7	breast:
7	chr3:113212582..113215057-chr3:113295773..113297368,19	MCF-7	breast:
8	chr3:113232536..113236068-chr3:113294639..113298182,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163611	Chromatin interaction
ENSG00000072858	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs60211993	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61001715	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61734094	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72950893	1.00[ASN][1000 genomes]
rs73853723	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853724	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853725	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853728	1.00[ASN][1000 genomes]
rs73853729	1.00[ASN][1000 genomes]
rs73853730	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853731	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73853734	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73854364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73854366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73854516	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73854517	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73854518	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73855948	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73855949	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9829540	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113279200-113300000	Weak transcription	Thymus	Thymus
2	chr3:113280200-113299200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:113280200-113321600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:113280400-113304000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:113280600-113302400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:113280600-113314800	Weak transcription	Spleen	Spleen
7	chr3:113281400-113302200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:113285200-113329800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:113285200-113343400	Weak transcription	Small Intestine	intestine
10	chr3:113286000-113316800	Weak transcription	Brain Angular Gyrus	brain
11	chr3:113287200-113301400	Weak transcription	Fetal Thymus	thymus
12	chr3:113287800-113298600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:113287800-113299200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:113288000-113300000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:113288000-113302200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:113289800-113299400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:113292200-113297800	Weak transcription	Primary B cells from cord blood	blood
18	chr3:113293800-113299600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr3:113294400-113321600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:113294800-113299600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:113294800-113304200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:113296000-113298800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr3:113296000-113298800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr3:113296200-113297400	Weak transcription	GM12878-XiMat	blood
25	chr3:113296200-113297800	Weak transcription	Primary T cells from cord blood	blood
26	chr3:113296200-113299200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:113296200-113299400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr3:113296200-113299400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr3:113296400-113299400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:113296800-113298000	Weak transcription	Liver	Liver
31	chr3:113296800-113299200	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:113296800-113303600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr3:113296800-113324200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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