Variant report

Variant	rs58041610
Chromosome Location	chr15:75066956-75066957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75063283..75067975-chr15:75109233..75113882,6	MCF-7	breast:
2	chr15:75062956..75068550-chr15:75133333..75136759,7	MCF-7	breast:
3	chr15:75053056..75055399-chr15:75065687..75067958,2	K562	blood:
4	chr15:75066889..75068448-chr15:75124429..75127236,2	MCF-7	breast:
5	chr15:75065072..75069457-chr15:75091713..75095477,3	MCF-7	breast:
6	chr15:75065380..75067175-chr15:75075106..75076815,2	K562	blood:
7	chr15:75051136..75052999-chr15:75065266..75067915,2	K562	blood:

Variant related genes	Relation type
ENSG00000261606	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs35231030	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35962255	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75056000-75069000	Weak transcription	Lung	lung
2	chr15:75061400-75069000	Weak transcription	Liver	Liver
3	chr15:75062800-75069200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:75063200-75067400	Enhancers	Primary B cells from cord blood	blood
5	chr15:75063200-75069400	Enhancers	Primary B cells from peripheral blood	blood
6	chr15:75063200-75069400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr15:75063400-75067600	Weak transcription	Spleen	Spleen
8	chr15:75063400-75068000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr15:75063400-75069400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr15:75063600-75067800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:75063600-75069000	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr15:75063800-75067600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:75063800-75069000	Weak transcription	Fetal Heart	heart
14	chr15:75063800-75069000	Weak transcription	Right Atrium	heart
15	chr15:75064000-75069400	Weak transcription	Fetal Brain Male	brain
16	chr15:75064200-75067400	Weak transcription	Thymus	Thymus
17	chr15:75064400-75068000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:75064400-75069000	Weak transcription	HUVEC	blood vessel
19	chr15:75064400-75069400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:75064400-75069400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:75064400-75069400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:75064600-75067000	Enhancers	Brain Hippocampus Middle	brain
23	chr15:75064600-75067600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:75064600-75068200	Weak transcription	Dnd41	blood
25	chr15:75064600-75069200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:75065000-75067600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr15:75065400-75067000	Enhancers	Stomach Mucosa	stomach
28	chr15:75065400-75067200	Enhancers	GM12878-XiMat	blood
29	chr15:75065400-75069000	Weak transcription	Brain Substantia Nigra	brain
30	chr15:75065400-75069200	Enhancers	Primary T cells from cord blood	blood
31	chr15:75065400-75069200	Enhancers	Duodenum Mucosa	Duodenum
32	chr15:75065600-75067000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:75065600-75067800	Weak transcription	Adipose Nuclei	Adipose
34	chr15:75065600-75069000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:75065600-75069200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr15:75065600-75072600	Enhancers	Primary hematopoietic stem cells	blood
37	chr15:75065600-75073200	Weak transcription	Brain Angular Gyrus	brain
38	chr15:75065600-75073600	Enhancers	Fetal Intestine Large	intestine
39	chr15:75065600-75073600	Enhancers	Fetal Intestine Small	intestine
40	chr15:75065800-75067000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:75065800-75067400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:75065800-75067600	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr15:75065800-75068200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr15:75065800-75069200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:75065800-75069400	Enhancers	Fetal Thymus	thymus
46	chr15:75065800-75072800	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr15:75066000-75067600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:75066200-75067200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:75066200-75067400	Weak transcription	Esophagus	oesophagus
50	chr15:75066200-75067600	Weak transcription	Placenta	Placenta

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