Variant report

Variant	rs58044615
Chromosome Location	chr14:77712277-77712278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77707273..77709179-chr14:77710972..77713210,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1122180	0.89[AFR][1000 genomes]
rs2216088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs440094	0.82[AFR][1000 genomes]
rs57056773	0.95[AFR][1000 genomes]
rs57290399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59093017	0.95[AFR][1000 genomes]
rs61736609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77686400-77712400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:77692800-77712400	Weak transcription	Fetal Intestine Small	intestine
3	chr14:77697600-77726800	Weak transcription	Brain Substantia Nigra	brain
4	chr14:77698400-77720000	Weak transcription	Pancreas	Pancrea
5	chr14:77704800-77719200	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:77705600-77714400	Weak transcription	Brain Anterior Caudate	brain
7	chr14:77707200-77712800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:77708400-77713400	Strong transcription	Brain Angular Gyrus	brain
9	chr14:77708400-77720600	Strong transcription	Fetal Brain Female	brain
10	chr14:77708600-77714800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:77709000-77718400	Strong transcription	Brain Inferior Temporal Lobe	brain
12	chr14:77709400-77712800	Strong transcription	Esophagus	oesophagus
13	chr14:77709800-77729600	Weak transcription	Fetal Brain Male	brain
14	chr14:77710000-77713200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:77710200-77712400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr14:77710600-77714600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:77711000-77717600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:77711200-77731000	Weak transcription	Spleen	Spleen
19	chr14:77711400-77712400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:77711800-77714800	Weak transcription	Brain Germinal Matrix	brain

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