Variant report

Variant	rs580469
Chromosome Location	chr15:43575624-43575625
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs570272	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825732	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9652444	0.87[CEU][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs580469	TGM5	cis	lymphoblastoid	seeQTL
rs580469	ADAL	cis	Adipose Subcutaneous	GTEx
rs580469	ADAL	cis	Artery Aorta	GTEx
rs580469	ADAL	cis	lung	GTEx
rs580469	ADAL	cis	Esophagus Muscularis	GTEx
rs580469	ADAL	cis	Artery Tibial	GTEx
rs580469	ADAL	cis	Heart Left Ventricle	GTEx
rs580469	SERF2	cis	lymphoblastoid	seeQTL
rs580469	ADAL	cis	Thyroid	GTEx
rs580469	ADAL	cis	Skin Sun Exposed Lower leg	GTEx
rs580469	C15orf63	cis	lymphoblastoid	seeQTL
rs580469	ELL3	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43574600-43577400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:43575400-43577400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:43575400-43577600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:43575400-43577800	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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