Variant report

Variant	rs58052426
Chromosome Location	chr4:81945643-81945644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1495640	1.00[EUR][1000 genomes]
rs1495641	1.00[EUR][1000 genomes]
rs1495642	1.00[EUR][1000 genomes]
rs1994991	1.00[EUR][1000 genomes]
rs1994993	1.00[EUR][1000 genomes]
rs1994994	1.00[EUR][1000 genomes]
rs2643919	1.00[EUR][1000 genomes]
rs2643920	1.00[EUR][1000 genomes]
rs2643924	1.00[EUR][1000 genomes]
rs2685465	1.00[EUR][1000 genomes]
rs2685470	1.00[EUR][1000 genomes]
rs2685472	1.00[EUR][1000 genomes]
rs2685473	1.00[EUR][1000 genomes]
rs2685475	1.00[EUR][1000 genomes]
rs55807732	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57426497	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57430976	1.00[EUR][1000 genomes]
rs59633314	1.00[EUR][1000 genomes]
rs6842249	1.00[EUR][1000 genomes]
rs72868561	1.00[EUR][1000 genomes]
rs73831262	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73831290	1.00[AMR][1000 genomes]
rs73831293	1.00[AMR][1000 genomes]
rs7659603	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412549	chr4:81834479-81951850	Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81943800-81950000	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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