The 2.0 version of rSNPBase

Variant report

Variant rs58052524
Chromosome Location chr3:111683388-111683389
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:111637200-111690600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr3:111642200-111690400 Weak transcription Spleen Spleen
3 chr3:111645400-111689600 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr3:111652400-111685800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr3:111653000-111686200 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr3:111654400-111695000 Strong transcription Placenta Placenta
7 chr3:111658600-111697400 Weak transcription Gastric stomach
8 chr3:111658800-111685800 Weak transcription HepG2 liver
9 chr3:111661600-111689800 Weak transcription Ovary ovary
10 chr3:111666600-111697400 Weak transcription Esophagus oesophagus
11 chr3:111670800-111685000 Strong transcription Liver Liver
12 chr3:111672800-111686000 Weak transcription Fetal Intestine Small intestine
13 chr3:111673000-111688400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr3:111673000-111688400 Weak transcription Fetal Stomach stomach
15 chr3:111673000-111697400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr3:111673000-111697400 Weak transcription Pancreas Pancrea
17 chr3:111673600-111686000 Weak transcription Fetal Kidney kidney
18 chr3:111675000-111697400 Weak transcription Lung lung
19 chr3:111675800-111685200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr3:111676800-111685800 Weak transcription Fetal Lung lung
21 chr3:111678200-111683400 Strong transcription Left Ventricle heart
22 chr3:111678200-111687800 Weak transcription Right Ventricle heart
23 chr3:111678200-111692800 Weak transcription Aorta Aorta
24 chr3:111678400-111685600 Strong transcription Adipose Nuclei Adipose
25 chr3:111680400-111683600 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr3:111680600-111683600 Strong transcription Fetal Intestine Large intestine
27 chr3:111680600-111684200 Strong transcription Fetal Muscle Leg muscle
28 chr3:111680600-111686400 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr3:111681000-111683600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr3:111681000-111685800 Weak transcription iPS-15b Cell Line embryonic stem cell
31 chr3:111681000-111686000 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr3:111681000-111686000 Weak transcription HUES48 Cell Line embryonic stem cell
33 chr3:111681200-111686000 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr3:111681200-111686400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr3:111681200-111686400 Weak transcription Fetal Thymus thymus
36 chr3:111681200-111689800 Weak transcription Thymus Thymus
37 chr3:111681400-111683800 Weak transcription Fetal Heart heart
38 chr3:111681400-111685600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr3:111681400-111687000 Weak transcription Stomach Smooth Muscle stomach
40 chr3:111681400-111694400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr3:111681400-111697200 Weak transcription HUES6 Cell Line embryonic stem cell
42 chr3:111681400-111697400 Weak transcription Rectal Smooth Muscle rectum
43 chr3:111682200-111687000 Weak transcription Pancreatic Islets Pancreatic Islet
44 chr3:111682400-111689800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr3:111682400-111694600 Strong transcription NH-A brain
46 chr3:111682600-111685400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr3:111682600-111685600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr3:111682600-111690800 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr3:111682800-111683600 Strong transcription HUES64 Cell Line embryonic stem cell
50 chr3:111682800-111683600 Strong transcription Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015