Variant report

Variant	rs58052558
Chromosome Location	chr8:110674596-110674597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11994641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11994669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73314610	0.82[AFR][1000 genomes]
rs73314613	0.82[AFR][1000 genomes]
rs73319200	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73319202	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73321062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7833977	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110670400-110676800	Weak transcription	Fetal Brain Male	brain
2	chr8:110670800-110678200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:110672000-110680200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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