Variant report

Variant	rs58059370
Chromosome Location	chr2:167815479-167815480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12616296	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73973542	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167814200-167817800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:167814200-167818000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:167814200-167818200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:167814400-167818000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:167814400-167818000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:167814600-167817000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:167814600-167817400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:167814600-167818000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:167814800-167815600	Enhancers	Brain Germinal Matrix	brain
10	chr2:167814800-167815800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:167814800-167816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:167814800-167817000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:167815000-167816000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:167815200-167815600	Weak transcription	Fetal Kidney	kidney
15	chr2:167815200-167815800	Weak transcription	Fetal Intestine Small	intestine
16	chr2:167815400-167815600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:167815400-167816000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:167815400-167816200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:167815400-167817600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:167815400-167817800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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