Variant report

Variant	rs58062916
Chromosome Location	chr7:105498885-105498886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105497685..105504581-chr7:105514330..105518670,5	K562	blood:
2	chr7:105497537..105500821-chr7:105513871..105517796,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128536	Chromatin interaction
ENSG00000146776	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10272675	0.86[ASN][1000 genomes]
rs17152164	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs58564118	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59054553	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59864610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59914899	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61108238	1.00[AFR][1000 genomes]
rs61210960	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
2	chr7:105479600-105506200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:105480000-105515600	Weak transcription	Ovary	ovary
4	chr7:105482200-105506400	Weak transcription	Psoas Muscle	Psoas
5	chr7:105483000-105506400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:105485200-105502400	Weak transcription	Hela-S3	cervix
7	chr7:105488000-105515600	Weak transcription	Aorta	Aorta
8	chr7:105489800-105506600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:105490200-105515600	Weak transcription	Gastric	stomach
10	chr7:105490200-105516200	Weak transcription	Thymus	Thymus
11	chr7:105490800-105509200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:105491000-105511600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:105491200-105499400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:105491200-105503600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:105491600-105511600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:105491600-105515200	Weak transcription	Spleen	Spleen
17	chr7:105491800-105501400	Weak transcription	Pancreas	Pancrea
18	chr7:105491800-105503200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:105491800-105515400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:105492200-105501400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:105492600-105502000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:105492800-105515800	Weak transcription	A549	lung
23	chr7:105493000-105502600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:105493000-105506400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:105493200-105501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr7:105493200-105516400	Weak transcription	Lung	lung
27	chr7:105494600-105514000	Weak transcription	Placenta	Placenta
28	chr7:105494800-105501400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:105494800-105503000	Weak transcription	Fetal Intestine Small	intestine
30	chr7:105494800-105506400	Weak transcription	Adipose Nuclei	Adipose
31	chr7:105494800-105508600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:105494800-105510000	Weak transcription	Small Intestine	intestine
33	chr7:105494800-105515600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:105495000-105503800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:105495000-105514800	Weak transcription	Brain Germinal Matrix	brain
36	chr7:105495000-105515200	Weak transcription	Right Atrium	heart
37	chr7:105495000-105515600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:105495200-105501400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:105495200-105501400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:105495200-105501400	Weak transcription	Fetal Stomach	stomach
41	chr7:105495200-105501600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:105495200-105501800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:105495200-105506200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:105495200-105506200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:105495200-105507000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr7:105495200-105508600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:105495200-105508800	Weak transcription	Fetal Brain Female	brain
48	chr7:105495200-105511400	Weak transcription	HUVEC	blood vessel
49	chr7:105495200-105512800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:105495200-105513000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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