Variant report

Variant	rs58079096
Chromosome Location	chr3:112374061-112374062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112363786..112368966-chr3:112369502..112375118,11	MCF-7	breast:
2	chr3:112362097..112368318-chr3:112369170..112375638,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58671322	0.98[AFR][1000 genomes]
rs60413428	0.98[AFR][1000 genomes]
rs61467102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853955	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853956	0.95[AFR][1000 genomes]
rs73853957	0.98[AFR][1000 genomes]
rs73853958	0.98[AFR][1000 genomes]
rs73853962	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112368000-112375000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:112368200-112375200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:112371400-112375200	Enhancers	HMEC	breast
4	chr3:112371800-112375000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:112372000-112375000	Enhancers	Fetal Lung	lung
6	chr3:112372400-112380600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:112373000-112374600	Enhancers	HSMMtube	muscle
8	chr3:112373200-112374200	Weak transcription	Fetal Stomach	stomach
9	chr3:112373200-112374200	Enhancers	NHEK	skin
10	chr3:112373200-112374800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:112373200-112375200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:112373200-112375200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:112373400-112375000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr3:112373400-112375400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:112373400-112376800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:112373600-112374400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:112373800-112375000	Enhancers	Colon Smooth Muscle	Colon
18	chr3:112373800-112375000	Enhancers	NHLF	lung
19	chr3:112373800-112376400	Enhancers	NHDF-Ad	bronchial
20	chr3:112374000-112374400	Enhancers	A549	lung
21	chr3:112374000-112375000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:112374000-112375000	Enhancers	HSMM	muscle
23	chr3:112374000-112375200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr3:112374000-112375200	Enhancers	NH-A	brain
25	chr3:112374000-112375200	Enhancers	Osteobl	bone

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