Variant report

Variant	rs58079307
Chromosome Location	chr3:136726219-136726220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72978756	1.00[AMR][1000 genomes]
rs72985298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136703800-136732400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:136704000-136730600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:136704800-136731000	Weak transcription	HSMMtube	muscle
4	chr3:136710000-136731000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:136713600-136732800	Weak transcription	Primary T cells from cord blood	blood
6	chr3:136714000-136730800	Weak transcription	HSMM	muscle
7	chr3:136714400-136730800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:136715000-136729000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:136715200-136731000	Weak transcription	Adipose Nuclei	Adipose
10	chr3:136715200-136733000	Weak transcription	Left Ventricle	heart
11	chr3:136715400-136730800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:136715600-136727000	Weak transcription	Thymus	Thymus
13	chr3:136715600-136730200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:136715800-136730400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:136720400-136727800	Weak transcription	NHEK	skin
16	chr3:136720400-136729000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:136720400-136729000	Weak transcription	Esophagus	oesophagus
18	chr3:136720400-136732400	Weak transcription	Hela-S3	cervix
19	chr3:136720600-136731000	Weak transcription	HMEC	breast
20	chr3:136723800-136732400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr3:136724600-136730800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:136725200-136729800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:136726000-136730400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:136726000-136732800	Enhancers	Fetal Thymus	thymus

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