Variant report

Variant	rs58079517
Chromosome Location	chr3:100174221-100174222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10936193	0.80[AMR][1000 genomes]
rs73150369	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7641299	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs58079517	TMEM45A	Cis_1M	lymphoblastoid	RTeQTL
rs58079517	TOMM70A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
2	chr3:100146400-100177800	Weak transcription	Ovary	ovary
3	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:100158400-100176400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:100163000-100177200	Weak transcription	HepG2	liver
6	chr3:100163400-100176400	Weak transcription	Fetal Lung	lung
7	chr3:100168600-100176200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:100168800-100175600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:100168800-100177800	Weak transcription	Left Ventricle	heart
10	chr3:100169400-100175600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:100169800-100174400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:100169800-100176400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:100170000-100174600	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:100170200-100175000	Weak transcription	Fetal Brain Female	brain
15	chr3:100170600-100176400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:100170600-100177400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:100170800-100175800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:100170800-100175800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:100170800-100177400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:100172000-100176400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:100172200-100185200	Weak transcription	Aorta	Aorta
22	chr3:100172400-100176200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:100172400-100177600	Weak transcription	Fetal Stomach	stomach
24	chr3:100173000-100177400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:100173200-100174600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr3:100173200-100176000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:100173400-100174400	Enhancers	Fetal Heart	heart
28	chr3:100173800-100174400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:100174000-100174400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr3:100174000-100175200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:100174000-100175600	Enhancers	Liver	Liver
32	chr3:100174200-100174600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:100174200-100175000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr3:100174200-100175400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr3:100174200-100175400	Enhancers	Fetal Thymus	thymus

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