Variant report

Variant	rs58080484
Chromosome Location	chr4:54816110-54816111
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17083649	1.00[EUR][1000 genomes]
rs17083988	1.00[EUR][1000 genomes]
rs17838983	1.00[EUR][1000 genomes]
rs4241981	1.00[EUR][1000 genomes]
rs58015793	1.00[EUR][1000 genomes]
rs60639295	1.00[EUR][1000 genomes]
rs61510049	1.00[EUR][1000 genomes]
rs6818057	1.00[EUR][1000 genomes]
rs73147749	1.00[EUR][1000 genomes]
rs73147754	1.00[EUR][1000 genomes]
rs73147760	1.00[EUR][1000 genomes]
rs73147772	1.00[EUR][1000 genomes]
rs73147780	1.00[EUR][1000 genomes]
rs73147784	1.00[EUR][1000 genomes]
rs73817145	1.00[EUR][1000 genomes]
rs73818173	1.00[EUR][1000 genomes]
rs7657528	1.00[EUR][1000 genomes]
rs7658546	1.00[EUR][1000 genomes]
rs7660482	1.00[EUR][1000 genomes]
rs7668948	1.00[EUR][1000 genomes]
rs7689472	1.00[EUR][1000 genomes]
rs7691475	1.00[EUR][1000 genomes]
rs7696276	1.00[EUR][1000 genomes]
rs7696283	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54815200-54817000	Weak transcription	Right Ventricle	heart
2	chr4:54815200-54827800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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