Variant report

Variant	rs58094632
Chromosome Location	chr9:101150079-101150080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57585376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58430349	1.00[AMR][1000 genomes]
rs7029340	1.00[AMR][1000 genomes]
rs73494884	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73499053	1.00[AFR][1000 genomes]
rs73655428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7874058	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
3	chr9:101143200-101156000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:101143200-101157000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:101144000-101172000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:101144400-101152800	Weak transcription	Brain Angular Gyrus	brain
7	chr9:101147400-101152000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101148600-101150400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:101148800-101151800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:101149000-101150600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr9:101149000-101153800	Weak transcription	Primary B cells from cord blood	blood
12	chr9:101149800-101151600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:101149800-101158600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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