Variant report

Variant	rs5809963
Chromosome Location	chr14:80289499-80289500
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3412265	chr14:80289484-80290457	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80286600-80291000	Enhancers	Brain Substantia Nigra	brain
2	chr14:80286800-80289600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr14:80287000-80289600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:80287600-80290000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:80287600-80291600	Weak transcription	Fetal Lung	lung
6	chr14:80287800-80290200	Weak transcription	Fetal Kidney	kidney
7	chr14:80288000-80296000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:80288200-80289600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:80288800-80290200	Weak transcription	Brain Anterior Caudate	brain
10	chr14:80289200-80291600	Enhancers	Brain Hippocampus Middle	brain
11	chr14:80289400-80290200	Weak transcription	Brain Angular Gyrus	brain
12	chr14:80289400-80290800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr14:80289400-80291600	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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