Variant report

Variant	rs58107036
Chromosome Location	chr11:85196533-85196534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85193729..85196593-chr2:133010514..133013451,3	K562	blood:
2	chr11:85193664..85196579-chr19:24184471..24186975,3	MCF-7	breast:
3	chr11:85195239..85196758-chr17:31148351..31151120,3	K562	blood:
4	chr11:85195109..85196717-chr16:33964349..33967903,4	K562	blood:
5	chr11:85195169..85196687-chr19:24184953..24186982,2	MCF-7	breast:
6	chr11:85193727..85196636-chr17:31148107..31149878,3	MCF-7	breast:
7	chr11:85195049..85196754-chr19:24184306..24186751,3	K562	blood:
8	chr11:85193624..85196703-chr2:133010749..133014388,3	K562	blood:
9	chr11:85193525..85196750-chr20:26187839..26191543,6	K562	blood:
10	chr11:85193511..85196736-chr17:33476647..33479728,15	K562	blood:
11	chr11:85193537..85196743-chr16:33959805..33967587,15	K562	blood:
12	chr11:85195072..85196733-chr9:79185153..79186653,2	K562	blood:
13	chr1:91851562..91854585-chr11:85195040..85196753,3	K562	blood:
14	chr11:85193599..85196549-chr19:24184495..24187673,3	K562	blood:
15	chr11:85193718..85196622-chr21:9824164..9827074,2	MCF-7	breast:
16	chr11:85193550..85196726-chr21:9824306..9828726,11	K562	blood:
17	chr1:206858043..206859563-chr11:85195223..85196734,2	K562	blood:
18	chr11:85195161..85196755-chr12:20702902..20704406,2	K562	blood:
19	chr11:85193550..85196769-chr21:9824428..9828726,11	K562	blood:
20	chr1:156184765..156186541-chr11:85195122..85196659,2	K562	blood:
21	chr11:85195583..85198227-chr8:113682885..113684772,2	MCF-7	breast:
22	chr11:85193511..85196736-chr17:33476657..33479798,16	K562	blood:
23	chr11:85195041..85196746-chr2:230044008..230046987,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000200434	Chromatin interaction
ENSG00000227195	Chromatin interaction
ENSG00000256642	Chromatin interaction
ENSG00000162889	Chromatin interaction
ENSG00000207986	Chromatin interaction
ENSG00000202174	Chromatin interaction
ENSG00000264462	Chromatin interaction
ENSG00000201966	Chromatin interaction
ENSG00000264063	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58316016	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59155263	0.87[AFR][1000 genomes]
rs60952728	0.85[AMR][1000 genomes]
rs61653387	0.85[AFR][1000 genomes]
rs7121938	0.83[AFR][1000 genomes]
rs7121977	0.81[AFR][1000 genomes]
rs7127077	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
11	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85195200-85199400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:85195200-85207000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:85195200-85238200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:85195400-85196600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:85195400-85196600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:85195400-85196600	Weak transcription	Pancreas	Pancrea
7	chr11:85195400-85196800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:85195400-85196800	Weak transcription	Spleen	Spleen
9	chr11:85195400-85197000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:85195400-85197200	Weak transcription	Left Ventricle	heart
11	chr11:85195400-85197200	Weak transcription	Ovary	ovary
12	chr11:85195400-85197400	Weak transcription	HSMMtube	muscle

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