Variant report

Variant	rs58116522
Chromosome Location	chr11:71762919-71762920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71755325..71758391-chr11:71761428..71765231,3	MCF-7	breast:
2	chr11:71752163..71754236-chr11:71761632..71764026,2	MCF-7	breast:
3	chr11:71756268..71758730-chr11:71762348..71764647,3	K562	blood:
4	chr11:71757230..71759123-chr11:71761836..71763848,2	K562	blood:
5	chr11:71761716..71763400-chr11:71778693..71780615,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137497	Chromatin interaction
ENSG00000206783	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55985525	1.00[AFR][1000 genomes]
rs59782279	0.86[AFR][1000 genomes]
rs60139676	1.00[AFR][1000 genomes]
rs60795063	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71753200-71772800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:71753200-71773000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:71753400-71765800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:71753400-71769800	Weak transcription	Psoas Muscle	Psoas
5	chr11:71753800-71764600	Weak transcription	HSMM	muscle
6	chr11:71754000-71767200	Weak transcription	Small Intestine	intestine
7	chr11:71754000-71769600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:71754000-71769600	Weak transcription	NH-A	brain
9	chr11:71754000-71769600	Weak transcription	NHLF	lung
10	chr11:71754000-71769600	Weak transcription	Osteobl	bone
11	chr11:71754000-71771400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:71754000-71772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:71754200-71769400	Weak transcription	HMEC	breast
14	chr11:71754200-71769400	Weak transcription	NHDF-Ad	bronchial
15	chr11:71754200-71769400	Weak transcription	NHEK	skin
16	chr11:71754200-71769600	Weak transcription	HSMMtube	muscle
17	chr11:71754200-71771000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:71754200-71772800	Weak transcription	Lung	lung
19	chr11:71754200-71777400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:71754200-71777600	Weak transcription	Brain Germinal Matrix	brain
21	chr11:71754200-71777600	Weak transcription	Colonic Mucosa	Colon
22	chr11:71754200-71777800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:71754200-71780200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:71754200-71780400	Weak transcription	Aorta	Aorta
25	chr11:71754200-71789600	Weak transcription	Fetal Brain Female	brain
26	chr11:71754800-71781000	Weak transcription	Fetal Intestine Large	intestine
27	chr11:71755000-71780800	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:71755200-71780400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:71755400-71765400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:71755400-71783000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:71755800-71778000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:71756000-71767400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:71756200-71763600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:71756200-71768200	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:71756200-71783200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:71756400-71764000	Strong transcription	Hela-S3	cervix
37	chr11:71756400-71768000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr11:71756600-71770600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:71757000-71783200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:71757200-71777600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr11:71757400-71772800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:71757400-71777800	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:71757800-71769600	Weak transcription	Esophagus	oesophagus
44	chr11:71757800-71776800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:71758200-71766200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:71758200-71767000	Strong transcription	Dnd41	blood
47	chr11:71758400-71771200	Weak transcription	Fetal Stomach	stomach
48	chr11:71759000-71763400	Strong transcription	GM12878-XiMat	blood
49	chr11:71759400-71769800	Weak transcription	Right Ventricle	heart
50	chr11:71760000-71772600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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