Variant report

Variant	rs58116543
Chromosome Location	chr11:74171683-74171684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:74170865..74173373-chr11:74203287..74204858,2	K562	blood:
2	chr11:74171659..74173234-chr11:74174907..74176791,2	MCF-7	breast:
3	chr11:74169758..74172325-chr11:74204191..74206118,2	K562	blood:
4	chr11:74169555..74172210-chr11:74251230..74253600,2	K562	blood:
5	chr11:74167420..74170050-chr11:74170321..74173103,2	MCF-7	breast:
6	chr11:74166040..74168250-chr11:74170163..74172017,2	K562	blood:
7	chr11:74169367..74173365-chr11:74176278..74179176,5	K562	blood:

Variant related genes	Relation type
ENSG00000254928	Chromatin interaction
ENSG00000175538	Chromatin interaction
ENSG00000077514	Chromatin interaction
ENSG00000254837	Chromatin interaction
ENSG00000175536	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11236111	0.83[AFR][1000 genomes]
rs11236118	1.00[AFR][1000 genomes]
rs12270975	0.92[AFR][1000 genomes]
rs12271302	1.00[AFR][1000 genomes]
rs12273068	0.96[AFR][1000 genomes]
rs12285733	0.96[AFR][1000 genomes]
rs12291914	1.00[AFR][1000 genomes]
rs12295841	0.92[AFR][1000 genomes]
rs60716017	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv555443	chr11:74109166-74180489	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1041154	chr11:74114801-74177909	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv393	chr11:74135862-74181417	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv832209	chr11:74155883-74329119	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74160000-74173000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:74160400-74177800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:74160600-74173000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:74161000-74173000	Weak transcription	Brain Anterior Caudate	brain
5	chr11:74161400-74172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:74166000-74172600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:74166800-74172800	Weak transcription	Left Ventricle	heart
8	chr11:74166800-74173000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:74167000-74172200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:74167400-74171800	Strong transcription	Fetal Intestine Large	intestine
11	chr11:74167400-74175600	Strong transcription	Fetal Stomach	stomach
12	chr11:74167600-74172400	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:74168600-74173200	Weak transcription	Spleen	Spleen
14	chr11:74168600-74175000	Weak transcription	Esophagus	oesophagus
15	chr11:74168600-74177600	Weak transcription	Small Intestine	intestine
16	chr11:74169000-74174200	Weak transcription	Gastric	stomach
17	chr11:74169200-74172800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:74169400-74172400	Enhancers	Stomach Mucosa	stomach
19	chr11:74170000-74172400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr11:74170400-74172000	Enhancers	Pancreas	Pancrea
21	chr11:74170600-74172000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr11:74170600-74172400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr11:74170600-74173600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr11:74170800-74171800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:74170800-74172200	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr11:74171000-74172200	Enhancers	Hela-S3	cervix
27	chr11:74171000-74173000	Enhancers	Liver	Liver
28	chr11:74171200-74172200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:74171200-74172200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:74171200-74172200	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
31	chr11:74171200-74172200	Enhancers	Right Atrium	heart
32	chr11:74171200-74173200	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
33	chr11:74171200-74173400	Active TSS	Primary B cells from cord blood	blood
34	chr11:74171400-74171800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:74171400-74171800	Enhancers	Brain Hippocampus Middle	brain
36	chr11:74171400-74171800	Transcr. at gene 5' and 3'	Duodenum Smooth Muscle	Duodenum
37	chr11:74171400-74171800	Weak transcription	Lung	lung
38	chr11:74171400-74172000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:74171400-74172000	Enhancers	Fetal Thymus	thymus
40	chr11:74171400-74172000	Enhancers	Psoas Muscle	Psoas
41	chr11:74171400-74172000	Enhancers	Rectal Smooth Muscle	rectum
42	chr11:74171400-74172000	Enhancers	HSMMtube	muscle
43	chr11:74171400-74172200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr11:74171400-74172200	Enhancers	HUVEC	blood vessel
45	chr11:74171400-74172200	Transcr. at gene 5' and 3'	K562	blood
46	chr11:74171400-74172600	Genic enhancers	Fetal Intestine Small	intestine
47	chr11:74171400-74172800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:74171400-74173000	Enhancers	A549	lung
49	chr11:74171400-74173200	Weak transcription	Colonic Mucosa	Colon
50	chr11:74171400-74173800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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