Variant report

Variant	rs58116552
Chromosome Location	chr7:96448481-96448482
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10230693	1.00[AMR][1000 genomes]
rs10243775	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248533	1.00[AMR][1000 genomes]
rs10251989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258676	1.00[AMR][1000 genomes]
rs10273144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11505826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17167849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17168062	1.00[AMR][1000 genomes]
rs28534372	1.00[AMR][1000 genomes]
rs28544578	1.00[AMR][1000 genomes]
rs58774293	1.00[AMR][1000 genomes]
rs9986747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9986795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5857	chr7:96440164-96494110	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96445200-96448800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:96448000-96448600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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