Variant report

Variant	rs58118439
Chromosome Location	chr7:41051589-41051590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10486701	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11975144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12111891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35866728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73688224	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5714	chr7:41026022-41059813	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:41047800-41052800	Weak transcription	NH-A	brain
2	chr7:41048600-41065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:41049000-41051600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:41049200-41052000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:41049600-41051600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:41049600-41052000	Enhancers	Fetal Muscle Leg	muscle
7	chr7:41049800-41051600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:41049800-41051800	Enhancers	NHDF-Ad	bronchial
9	chr7:41049800-41053200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:41050000-41052000	Enhancers	HSMM	muscle
11	chr7:41051000-41052800	Weak transcription	Osteobl	bone
12	chr7:41051000-41060400	Weak transcription	HSMMtube	muscle
13	chr7:41051400-41052200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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