Variant report

Variant	rs58121843
Chromosome Location	chr1:57918355-57918356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12094275	1.00[EUR][1000 genomes]
rs169169	1.00[EUR][1000 genomes]
rs17115834	1.00[EUR][1000 genomes]
rs17115844	1.00[EUR][1000 genomes]
rs269041	1.00[EUR][1000 genomes]
rs269043	1.00[EUR][1000 genomes]
rs269047	1.00[EUR][1000 genomes]
rs269053	1.00[EUR][1000 genomes]
rs269055	1.00[EUR][1000 genomes]
rs269056	1.00[EUR][1000 genomes]
rs3844040	1.00[EUR][1000 genomes]
rs475078	1.00[EUR][1000 genomes]
rs486804	1.00[EUR][1000 genomes]
rs497367	1.00[EUR][1000 genomes]
rs523282	1.00[EUR][1000 genomes]
rs534715	1.00[EUR][1000 genomes]
rs537659	1.00[EUR][1000 genomes]
rs539257	1.00[EUR][1000 genomes]
rs566802	1.00[EUR][1000 genomes]
rs57855581	1.00[EUR][1000 genomes]
rs60825740	1.00[EUR][1000 genomes]
rs72909285	1.00[EUR][1000 genomes]
rs72909297	1.00[EUR][1000 genomes]
rs72911219	1.00[EUR][1000 genomes]
rs7548078	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57917400-57933800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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