Variant report

Variant	rs58132887
Chromosome Location	chr2:97079576-97079577
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:97078679..97080974-chr2:97167541..97169500,2	MCF-7	breast:
2	chr2:97071293..97074013-chr2:97077222..97080195,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12611936	1.00[AMR][1000 genomes]
rs12612136	1.00[AMR][1000 genomes]
rs12614623	1.00[AMR][1000 genomes]
rs12616326	1.00[AMR][1000 genomes]
rs12619114	1.00[AMR][1000 genomes]
rs12619490	1.00[AMR][1000 genomes]
rs12619573	1.00[AMR][1000 genomes]
rs12619919	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12620576	1.00[AMR][1000 genomes]
rs12620768	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12621163	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12621688	1.00[AMR][1000 genomes]
rs2276647	1.00[AMR][1000 genomes]
rs2290908	1.00[AMR][1000 genomes]
rs3813659	1.00[AMR][1000 genomes]
rs3813660	1.00[AMR][1000 genomes]
rs57213829	1.00[AMR][1000 genomes]
rs57319731	1.00[AMR][1000 genomes]
rs57367779	1.00[AMR][1000 genomes]
rs57477571	1.00[AMR][1000 genomes]
rs58152078	1.00[AMR][1000 genomes]
rs59168739	1.00[AMR][1000 genomes]
rs59525841	1.00[AMR][1000 genomes]
rs59621486	1.00[AMR][1000 genomes]
rs59911784	1.00[AMR][1000 genomes]
rs59939559	1.00[AMR][1000 genomes]
rs60013962	1.00[AMR][1000 genomes]
rs60020980	1.00[AMR][1000 genomes]
rs60302421	1.00[AMR][1000 genomes]
rs60596893	1.00[AMR][1000 genomes]
rs60893927	1.00[AMR][1000 genomes]
rs61096003	1.00[AMR][1000 genomes]
rs61341985	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	nsv874679	chr2:96860971-97184160	Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
8	nsv508155	chr2:96934695-97138302	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97078400-97079600	Enhancers	Colonic Mucosa	Colon
2	chr2:97078600-97079600	Enhancers	Fetal Muscle Leg	muscle
3	chr2:97079000-97079600	Flanking Active TSS	Hela-S3	cervix
4	chr2:97079200-97079600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:97079200-97079600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:97079200-97079600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr2:97079200-97079600	Flanking Active TSS	A549	lung
8	chr2:97079200-97079600	Flanking Active TSS	HepG2	liver
9	chr2:97079200-97079600	Flanking Active TSS	Osteobl	bone
10	chr2:97079200-97079800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:97079200-97080000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:97079200-97080000	Enhancers	Stomach Mucosa	stomach
13	chr2:97079400-97079600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:97079400-97079600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:97079400-97079600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:97079400-97079600	Enhancers	Liver	Liver
17	chr2:97079400-97079600	Enhancers	Duodenum Mucosa	Duodenum
18	chr2:97079400-97079600	Enhancers	Fetal Intestine Small	intestine
19	chr2:97079400-97079600	Enhancers	Fetal Kidney	kidney
20	chr2:97079400-97079600	Enhancers	Gastric	stomach
21	chr2:97079400-97079600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr2:97079400-97079600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr2:97079400-97079600	Enhancers	Stomach Smooth Muscle	stomach
24	chr2:97079400-97079600	Enhancers	NHEK	skin
25	chr2:97079400-97079800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr2:97079400-97079800	Enhancers	Fetal Intestine Large	intestine
27	chr2:97079400-97079800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr2:97079400-97080800	Weak transcription	Pancreas	Pancrea
29	chr2:97079400-97081200	Weak transcription	Right Atrium	heart

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