Variant report

Variant	rs58134223
Chromosome Location	chr4:86744978-86744979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:86744487-86745055	SK-N-SH	brain:	n/a	chr4:86744773-86744782
2	EP300	chr4:86744200-86745193	SK-N-SH	brain:	n/a	n/a
3	CEBPB	chr4:86744249-86744989	HCT-116	colon:	n/a	chr4:86744532-86744543

Variant related genes	Relation type
ARHGAP24	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10016102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86728200-86747200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86729400-86747400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:86736200-86748600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:86737600-86763200	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86740200-86745000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:86740200-86747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:86740200-86747200	Weak transcription	Fetal Lung	lung
8	chr4:86740200-86748600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:86740200-86748800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:86741600-86745800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:86741800-86747200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:86743000-86746000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:86743200-86745800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:86743200-86748800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:86743400-86745800	Enhancers	Osteobl	bone
16	chr4:86743600-86747200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:86743800-86747200	Weak transcription	Aorta	Aorta
18	chr4:86744200-86746000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:86744200-86748600	Enhancers	Fetal Heart	heart
20	chr4:86744200-86748600	Enhancers	HSMM	muscle
21	chr4:86744400-86745600	Flanking Active TSS	HUVEC	blood vessel
22	chr4:86744400-86746000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:86744400-86747000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr4:86744400-86747400	Enhancers	Fetal Kidney	kidney
25	chr4:86744600-86745000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr4:86744600-86745000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr4:86744600-86745000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:86744600-86745000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr4:86744600-86745000	Enhancers	Fetal Muscle Leg	muscle
30	chr4:86744600-86745000	Enhancers	Left Ventricle	heart
31	chr4:86744600-86745000	Enhancers	Right Ventricle	heart
32	chr4:86744600-86745000	Enhancers	Small Intestine	intestine
33	chr4:86744600-86745200	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr4:86744600-86745200	Enhancers	NHLF	lung
35	chr4:86744600-86745600	Enhancers	H1 Cell Line	embryonic stem cell
36	chr4:86744600-86745600	Enhancers	Rectal Smooth Muscle	rectum
37	chr4:86744600-86745800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr4:86744600-86745800	Enhancers	Stomach Mucosa	stomach
39	chr4:86744600-86745800	Enhancers	HSMMtube	muscle
40	chr4:86744600-86746000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:86744600-86746000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr4:86744600-86747000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr4:86744600-86748200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr4:86744600-86748600	Enhancers	Adipose Nuclei	Adipose
45	chr4:86744800-86745000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:86744800-86745200	Enhancers	NHDF-Ad	bronchial
47	chr4:86744800-86745400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr4:86744800-86745600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr4:86744800-86745600	Active TSS	Stomach Smooth Muscle	stomach
50	chr4:86744800-86745800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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