Variant report

Variant	rs58134482
Chromosome Location	chr22:32918814-32918815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58897867	1.00[AMR][1000 genomes]
rs60809851	1.00[AMR][1000 genomes]
rs73881773	1.00[AMR][1000 genomes]
rs8138357	1.00[AMR][1000 genomes]
rs9619287	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv914981	chr22:32912277-32940660	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32898600-32928000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr22:32898800-32927200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32904000-32924400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:32910200-32925600	Weak transcription	Spleen	Spleen
5	chr22:32914000-32919200	Weak transcription	Adipose Nuclei	Adipose
6	chr22:32914200-32924000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr22:32914200-32928000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr22:32914400-32928200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr22:32914400-32932000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr22:32915600-32919000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr22:32916000-32927600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr22:32916600-32919200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr22:32916800-32919000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr22:32917000-32919200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr22:32917600-32919000	Enhancers	Brain Substantia Nigra	brain
16	chr22:32918400-32919000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr22:32918400-32919000	Enhancers	Brain Anterior Caudate	brain
18	chr22:32918400-32919000	Enhancers	Fetal Heart	heart
19	chr22:32918400-32919000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr22:32918400-32919000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr22:32918800-32920000	Weak transcription	Brain Hippocampus Middle	brain
22	chr22:32918800-32923800	Weak transcription	Brain Angular Gyrus	brain

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