Variant report

Variant	rs58134809
Chromosome Location	chr3:134480056-134480057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12487566	0.81[ASN][1000 genomes]
rs12487946	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488253	0.81[ASN][1000 genomes]
rs12494934	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447692	0.89[ASN][1000 genomes]
rs1554112	0.89[ASN][1000 genomes]
rs935512	0.89[ASN][1000 genomes]
rs938379	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877515	chr3:134460368-134591138	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv518817	chr3:134478108-134486080	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134479200-134481200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr3:134479400-134480400	Enhancers	Fetal Brain Female	brain
3	chr3:134479600-134480400	Enhancers	Fetal Brain Male	brain
4	chr3:134479600-134480400	Enhancers	Fetal Muscle Trunk	muscle
5	chr3:134479600-134480600	Enhancers	Fetal Muscle Leg	muscle
6	chr3:134479800-134480600	Enhancers	Fetal Heart	heart
7	chr3:134480000-134481400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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