Variant report

Variant	rs58138729
Chromosome Location	chr4:80543538-80543539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60454622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830563	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80541800-80548600	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:80542200-80543600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:80543000-80543800	Enhancers	Fetal Brain Male	brain
4	chr4:80543200-80546600	Weak transcription	K562	blood
5	chr4:80543400-80544200	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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