Variant report

Variant	rs58140932
Chromosome Location	chr7:25327324-25327325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17151461	1.00[EUR][1000 genomes]
rs17151465	1.00[EUR][1000 genomes]
rs17151467	1.00[EUR][1000 genomes]
rs2188991	1.00[EUR][1000 genomes]
rs2717868	1.00[EUR][1000 genomes]
rs57338768	1.00[EUR][1000 genomes]
rs58207524	1.00[EUR][1000 genomes]
rs61088812	1.00[EUR][1000 genomes]
rs73283034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73288971	1.00[EUR][1000 genomes]
rs73691537	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691544	1.00[EUR][1000 genomes]
rs73691545	1.00[EUR][1000 genomes]
rs73691550	1.00[EUR][1000 genomes]
rs73691555	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606424	chr7:24982529-25466521	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25326000-25327400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:25326200-25328200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:25326600-25336000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:25326800-25327400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:25327000-25327600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:25327200-25327600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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