Variant report

Variant	rs58142652
Chromosome Location	chr13:49370707-49370708
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1025235	1.00[AMR][1000 genomes]
rs1323554	1.00[AMR][1000 genomes]
rs17072194	1.00[AMR][1000 genomes]
rs56797165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032491	1.00[AMR][1000 genomes]
rs59725117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480204	1.00[AMR][1000 genomes]
rs73480220	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480223	1.00[AMR][1000 genomes]
rs73480233	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480245	1.00[AMR][1000 genomes]
rs73480249	1.00[AMR][1000 genomes]
rs73480253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73482300	1.00[AMR][1000 genomes]
rs73482301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484304	1.00[AMR][1000 genomes]
rs73484316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7994259	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832606	chr13:49352212-49506009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49366800-49371200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:49366800-49371400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr13:49366800-49371400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:49366800-49371400	Weak transcription	Hela-S3	cervix
5	chr13:49366800-49374800	Weak transcription	NHDF-Ad	bronchial
6	chr13:49366800-49383000	Weak transcription	Osteobl	bone
7	chr13:49367000-49371400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:49370600-49371400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links