Variant report

Variant	rs58143877
Chromosome Location	chr15:40729961-40729962
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:40728064-40734370	K562	blood:	n/a	n/a
2	MAX	chr15:40729926-40730211	K562	blood:	n/a	n/a
3	MYC	chr15:40729926-40730184	K562	blood:	n/a	n/a
4	MAX	chr15:40729787-40730312	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr15:40729610-40730151	K562	blood:	n/a	n/a
6	MYC	chr15:40729914-40730256	K562	blood:	n/a	n/a
7	MAX	chr15:40729728-40730310	K562	blood:	n/a	n/a
8	HMGN3	chr15:40729863-40730203	K562	blood:	n/a	n/a
9	SIN3A	chr15:40728333-40730280	H1-hESC	embryonic stem cell:	n/a	chr15:40728560-40728573 chr15:40728707-40728718 chr15:40728404-40728417
10	MYC	chr15:40729897-40730306	K562	blood:	n/a	n/a
11	POLR2A	chr15:40729787-40730231	K562	blood:	n/a	n/a
12	UBTF	chr15:40729809-40730089	K562	blood:	n/a	n/a
13	MYC	chr15:40729915-40730106	MCF-7	breast:	n/a	n/a
14	MAX	chr15:40729763-40730322	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr15:40729898-40730091	MCF-7	breast:	n/a	n/a
16	ZBTB7A	chr15:40729666-40729983	K562	blood:	n/a	n/a
17	RCOR1	chr15:40729800-40729975	K562	blood:	n/a	n/a
18	TAF1	chr15:40729866-40730149	K562	blood:	n/a	n/a
19	CTBP2	chr15:40728398-40730550	H1-hESC	embryonic stem cell:	n/a	n/a
20	CCNT2	chr15:40729920-40730120	K562	blood:	n/a	n/a
21	CHD2	chr15:40729900-40730241	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40697680..40700101-chr15:40729674..40731814,2	MCF-7	breast:
2	chr15:40727012..40730697-chr15:40730781..40733287,4	MCF-7	breast:
3	chr15:40675969..40678151-chr15:40728400..40731089,2	K562	blood:
4	chr15:40618049..40622052-chr15:40729021..40731269,3	K562	blood:
5	chr15:40729710..40731654-chr15:40849849..40851885,2	MCF-7	breast:
6	chr15:40619456..40622052-chr15:40729021..40731269,2	K562	blood:
7	chr15:40718096..40719599-chr15:40728786..40730552,2	K562	blood:

No data

Variant related genes	Relation type
BAHD1	TF binding region
ENSG00000140320	Chromatin interaction
ENSG00000128928	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56864155	1.00[AMR][1000 genomes]
rs7176449	1.00[AMR][1000 genomes]
rs73383142	1.00[AMR][1000 genomes]
rs73383148	1.00[AMR][1000 genomes]
rs73395400	1.00[AMR][1000 genomes]
rs8036383	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40727600-40730200	Bivalent Enhancer	Fetal Brain Male	brain
2	chr15:40728000-40730200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:40728000-40730200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr15:40728200-40730000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:40728200-40730200	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr15:40728200-40730200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr15:40728200-40730400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr15:40728200-40731000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:40728400-40730400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
10	chr15:40728400-40732000	Flanking Active TSS	K562	blood
11	chr15:40728600-40730000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:40728800-40730000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:40728800-40730000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:40728800-40730600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
15	chr15:40728800-40731400	Enhancers	Gastric	stomach
16	chr15:40729000-40730200	Enhancers	Right Ventricle	heart
17	chr15:40729200-40730000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
18	chr15:40729200-40730200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
19	chr15:40729200-40730400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr15:40729200-40730800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:40729200-40731400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:40729200-40731800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:40729200-40731800	Bivalent Enhancer	Placenta	Placenta
24	chr15:40729200-40731800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr15:40729200-40732200	Bivalent Enhancer	Fetal Lung	lung
26	chr15:40729400-40730000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:40729400-40730000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:40729400-40730000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:40729400-40730000	Bivalent Enhancer	Primary B cells from cord blood	blood
30	chr15:40729400-40730000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:40729400-40730000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
32	chr15:40729400-40730000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:40729400-40730000	Bivalent Enhancer	Brain Germinal Matrix	brain
34	chr15:40729400-40730000	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr15:40729400-40730000	Bivalent Enhancer	Colonic Mucosa	Colon
36	chr15:40729400-40730000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
37	chr15:40729400-40730000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
38	chr15:40729400-40730200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
39	chr15:40729400-40730200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:40729400-40730200	Bivalent Enhancer	Fetal Brain Female	brain
41	chr15:40729400-40730200	Bivalent Enhancer	Fetal Intestine Large	intestine
42	chr15:40729400-40730200	Bivalent Enhancer	Fetal Intestine Small	intestine
43	chr15:40729400-40730200	Enhancers	Ovary	ovary
44	chr15:40729400-40730200	Enhancers	A549	lung
45	chr15:40729400-40730400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
46	chr15:40729400-40730400	Enhancers	Brain Cingulate Gyrus	brain
47	chr15:40729400-40730400	Bivalent Enhancer	Fetal Stomach	stomach
48	chr15:40729400-40730600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
49	chr15:40729400-40730600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
50	chr15:40729400-40730600	Weak transcription	Pancreas	Pancrea

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