Variant report

Variant	rs58146190
Chromosome Location	chr8:105490876-105490877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105483550..105485713-chr8:105489213..105491392,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRP12-2	chr8:105490767-105493030	NONHSAT128216

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs57142502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58114675	0.90[AFR][1000 genomes]
rs59493567	0.90[AFR][1000 genomes]
rs59637616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60373042	0.90[AFR][1000 genomes]
rs61625565	0.81[AFR][1000 genomes]
rs73293232	0.85[AFR][1000 genomes]
rs73293259	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293262	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293265	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293273	0.90[AFR][1000 genomes]
rs73293281	0.90[AFR][1000 genomes]
rs73293282	0.90[AFR][1000 genomes]
rs73293285	0.90[AFR][1000 genomes]
rs73295106	0.81[AFR][1000 genomes]
rs73295110	0.81[AFR][1000 genomes]
rs73295123	0.90[AFR][1000 genomes]
rs73295125	0.90[AFR][1000 genomes]
rs73295147	0.81[AFR][1000 genomes]
rs73295152	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105485800-105503000	Weak transcription	HSMM	muscle
2	chr8:105485800-105503000	Weak transcription	HSMMtube	muscle
3	chr8:105489400-105512800	Weak transcription	Gastric	stomach
4	chr8:105489600-105503000	Weak transcription	Left Ventricle	heart
5	chr8:105490800-105491000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:105490800-105491200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:105490800-105491400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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