Variant report

Variant	rs581473
Chromosome Location	chr12:45076683-45076684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10506256	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10785515	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11182640	0.80[EUR][1000 genomes]
rs1563043	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4544065	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs583575	0.85[ASN][1000 genomes]
rs605722	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs615760	0.85[ASN][1000 genomes]
rs628408	0.85[ASN][1000 genomes]
rs632481	0.86[ASN][1000 genomes]
rs636843	0.84[ASN][1000 genomes]
rs678663	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs688669	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7308509	0.81[EUR][1000 genomes]
rs7968076	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs838973	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs966383	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs978540	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45051800-45081200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr12:45056600-45083800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:45062400-45081200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:45065000-45116000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:45066800-45083000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:45069800-45082600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:45073400-45080800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:45073600-45080600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:45073800-45083800	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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