Variant report
Variant | rs58153756 |
---|---|
Chromosome Location | chr14:105388997-105388998 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:12)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | RELA | chr14:105388879-105389496 | GM19099 | blood: | n/a | chr14:105389062-105389071 chr14:105389062-105389071 |
2 | EBF1 | chr14:105388915-105389279 | GM12878 | blood: | n/a | chr14:105389086-105389097 |
3 | RELA | chr14:105388884-105389477 | GM19193 | blood: | n/a | chr14:105389062-105389071 chr14:105389062-105389071 |
4 | RELA | chr14:105388914-105389273 | GM10847 | blood: | n/a | chr14:105389062-105389071 chr14:105389062-105389071 |
5 | EBF1 | chr14:105388971-105389244 | GM12878 | blood: | n/a | chr14:105389086-105389097 |
6 | RELA | chr14:105388891-105389273 | GM15510 | blood: | n/a | chr14:105389062-105389071 chr14:105389062-105389071 |
7 | RELA | chr14:105388890-105389323 | GM12891 | blood: | n/a | chr14:105389062-105389071 chr14:105389062-105389071 |
8 | RUNX3 | chr14:105388960-105389266 | GM12878 | blood: | n/a | n/a |
9 | RUNX3 | chr14:105388958-105389197 | GM12878 | blood: | n/a | n/a |
10 | EBF1 | chr14:105388974-105389236 | GM12878 | blood: | n/a | chr14:105389086-105389097 |
11 | RELA | chr14:105388903-105389364 | GM18951 | blood: | n/a | chr14:105389062-105389071 chr14:105389062-105389071 |
12 | ZNF384 | chr14:105388917-105389247 | GM12878 | blood: | n/a | n/a |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr14:105387917..105389579-chr14:105391282..105393689,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
PLD4 | TF binding region |
rs_ID | r2[population] |
---|---|
rs12050087 | 1.00[AFR][1000 genomes] |
rs2819417 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2841271 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2841272 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34004095 | 1.00[AFR][1000 genomes] |
rs3742938 | 1.00[AFR][1000 genomes] |
rs41314519 | 1.00[AFR][1000 genomes] |
rs57108735 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs57147900 | 1.00[AFR][1000 genomes] |
rs57308399 | 0.88[ASN][1000 genomes] |
rs57804458 | 1.00[AFR][1000 genomes] |
rs58365272 | 1.00[AFR][1000 genomes] |
rs60520694 | 0.86[EUR][1000 genomes] |
rs61203074 | 0.88[ASN][1000 genomes] |
rs61316883 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs61745186 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61761195 | 1.00[AFR][1000 genomes] |
rs7144557 | 1.00[AFR][1000 genomes] |
rs72700126 | 1.00[AFR][1000 genomes] |
rs72700128 | 1.00[AFR][1000 genomes] |
rs72700150 | 1.00[AFR][1000 genomes] |
rs72700170 | 1.00[AFR][1000 genomes] |
rs72700172 | 1.00[AFR][1000 genomes] |
rs72700175 | 1.00[AFR][1000 genomes] |
rs72700176 | 1.00[AFR][1000 genomes] |
rs72700183 | 1.00[AFR][1000 genomes] |
rs72700187 | 1.00[AFR][1000 genomes] |
rs72700189 | 1.00[AFR][1000 genomes] |
rs72700192 | 1.00[AFR][1000 genomes] |
rs72700202 | 1.00[AFR][1000 genomes] |
rs72716002 | 1.00[AFR][1000 genomes] |
rs72718103 | 1.00[AFR][1000 genomes] |
rs72718104 | 1.00[AFR][1000 genomes] |
rs72718105 | 1.00[AFR][1000 genomes] |
rs8012919 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1053591 | chr14:105024558-105475931 | Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 114 gene(s) | inside rSNPs | diseases |
2 | nsv542224 | chr14:105024558-105475931 | Bivalent Enhancer Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 114 gene(s) | inside rSNPs | diseases |
3 | esv1828345 | chr14:105100787-105803170 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
4 | nsv542225 | chr14:105133688-105803170 | Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
5 | nsv542227 | chr14:105157572-105803170 | Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 147 gene(s) | inside rSNPs | diseases |
6 | nsv456456 | chr14:105285159-105412541 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
7 | nsv566099 | chr14:105285159-105412541 | Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
8 | nsv917106 | chr14:105339195-105803170 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 94 gene(s) | inside rSNPs | diseases |
9 | nsv566139 | chr14:105347296-105417147 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
10 | nsv902419 | chr14:105381763-105494262 | Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 59 gene(s) | inside rSNPs | diseases |
11 | nsv1049253 | chr14:105384959-105471855 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:105387400-105390400 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
2 | chr14:105387800-105389200 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
3 | chr14:105388400-105389000 | Enhancers | Primary B cells from peripheral blood | blood |
4 | chr14:105388600-105389000 | Weak transcription | Primary B cells from cord blood | blood |
5 | chr14:105388800-105389000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |