Variant report

Variant	rs58155978
Chromosome Location	chr17:16844494-16844495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:16844487-16844902	GM12878	blood:	n/a	n/a
2	NFATC1	chr17:16844358-16844642	GM12878	blood:	n/a	n/a
3	POLR2A	chr17:16844458-16844802	GM12878	blood:	n/a	n/a
4	POLR2A	chr17:16840620-16844926	GM12878	blood:	n/a	n/a
5	POLR2A	chr17:16844454-16844972	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
TNFRSF13B	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3892371	1.00[EUR][1000 genomes]
rs55703181	0.90[EUR][1000 genomes]
rs56399647	0.90[EUR][1000 genomes]
rs72637381	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2753951	chr17:16660721-16848750	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2755100	chr17:16660721-16848750	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv833379	chr17:16683585-16859539	Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv1055688	chr17:16800788-16868860	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv907726	chr17:16821204-16875636	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16840800-16847400	Strong transcription	GM12878-XiMat	blood
2	chr17:16841000-16846600	Strong transcription	Primary B cells from peripheral blood	blood
3	chr17:16842000-16844800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr17:16842400-16846400	Weak transcription	Brain Anterior Caudate	brain
5	chr17:16842600-16849200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:16843000-16844800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:16843800-16844800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr17:16843800-16848000	Enhancers	Fetal Muscle Leg	muscle
9	chr17:16844200-16846400	Weak transcription	Brain Substantia Nigra	brain
10	chr17:16844200-16847000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr17:16844200-16848000	Weak transcription	Spleen	Spleen
12	chr17:16844200-16848600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr17:16844200-16848800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr17:16844200-16849000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr17:16844200-16849200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr17:16844200-16852000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr17:16844400-16844600	Enhancers	Brain Cingulate Gyrus	brain
18	chr17:16844400-16848800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr17:16844400-16848800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr17:16844400-16848800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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